TreeIndex {scTreeViz} | R Documentation |
create a new TreeIndex object
TreeIndex(hierarchy = NULL, feature_order = NULL)
hierarchy |
hierarchy as a data.table |
feature_order |
order of the tree if different from colnames |
a 'TreeIndex' object
library(metagenomeSeq) data(mouseData) counts <- MRcounts(mouseData) hierarchy <- fData(mouseData) tree <- TreeIndex(hierarchy)