TME_plot {scTHI} | R Documentation |
Generates a plot on the t-SNE coordinates, labeling cells by TME classification.
TME_plot(tsneData, Class, cexPoint = 0.8)
tsneData |
X and y coordinates of points in the plot. |
Class |
Object returned by TME_classification function. |
cexPoint |
Set the point size. |
None
library(scTHI.data) data(scExample) result <- scTHI_score(scExample, cellCusterA = colnames(scExample)[1:30], cellCusterB = colnames(scExample)[31:100], cellCusterAName = "ClusterA", cellCusterBName = "ClusterB", filterCutoff = 0, pvalueCutoff = 1, nPermu = 100, ncore = 8) result <- scTHI_runTsne(result) Class <- TME_classification(scExample) TME_plot(tsneData = result$tsneData, Class)