plot_QC_pairs {scPipe} | R Documentation |
SingleCellExperiment
objectPlot GGAlly pairs plot of QC statistics from SingleCellExperiment
object
plot_QC_pairs(sce, sel_col = NULL)
sce |
a |
sel_col |
a vector of column names which indicate the columns to use for plot. By default it will be the statistics generated by 'calculate_QC_metrics()' |
a ggplot2 object
data("sc_sample_data") data("sc_sample_qc") sce = SingleCellExperiment(assays = list(counts = as.matrix(sc_sample_data))) organism(sce) = "mmusculus_gene_ensembl" gene_id_type(sce) = "ensembl_gene_id" QC_metrics(sce) = sc_sample_qc demultiplex_info(sce) = cell_barcode_matching UMI_dup_info(sce) = UMI_duplication sce = detect_outlier(sce) plot_QC_pairs(sce)