find_stability {scGPS} | R Documentation |
from clustering results, compare similarity between clusters by adjusted Randindex
find_stability(list_clusters = NULL, cluster_ref = NULL)
list_clusters |
is a object from the iterative clustering runs |
cluster_ref |
is a object from the reference cluster |
a data frame
with stability scores and rand_index results
Quan Nguyen, 2017-11-25
day5 <- day_5_cardio_cell_sample mixedpop2 <-new_summarized_scGPS_object(ExpressionMatrix = day5$dat5_counts, GeneMetadata = day5$dat5geneInfo, CellMetadata = day5$dat5_clusters) cluster_all <-clustering(object=mixedpop2) stab_df <- find_stability(list_clusters=cluster_all$list_clusters, cluster_ref = cluster_all$cluster_ref)