plotDoubletMap {scDblFinder} | R Documentation |
Plots a heatmap of observed versus expected doublets. Requires the 'ComplexHeatmap' package.
plotDoubletMap( sce, colorBy = "enrichment", labelBy = "observed", addSizes = TRUE, col = NULL, column_title = "Clusters", row_title = "Clusters", column_title_side = "bottom", na_col = "white", ... )
sce |
A SingleCellExperiment object on which 'scDblFinder' has been run with the cluster-based approach. |
colorBy |
Determines the color mapping. Either "enrichment" (for log2-enrichment over expectation) or any column of 'metadata(sce)$scDblFinder.stats' |
labelBy |
Determines the cell labels. Either "enrichment" (for log2-enrichment over expectation) or any column of 'metadata(sce)$scDblFinder.stats' |
addSizes |
Logical; whether to add the sizes of clusters to labels |
col |
The colors scale to use (passed to 'ComplexHeatmap::Heatmap') |
column_title |
passed to 'ComplexHeatmap::Heatmap' |
row_title |
passed to 'ComplexHeatmap::Heatmap' |
column_title_side |
passed to 'ComplexHeatmap::Heatmap' |
na_col |
color for NA cells |
... |
passed to 'ComplexHeatmap::Heatmap' |
a Heatmap object