mockDoubletSCE {scDblFinder} | R Documentation |
Creates a mock random single-cell experiment object with doublets
mockDoubletSCE( ncells = c(200, 300), ngenes = 200, mus = NULL, dbl.rate = 0.1, only.heterotypic = TRUE )
ncells |
A positive integer vector indicating the number of cells per cluster (min 2 clusters) |
ngenes |
The number of genes to simulate. Ignored if 'mus' is given. |
mus |
A list of cluster averages. |
dbl.rate |
The doublet rate |
only.heterotypic |
Whether to create only heterotypic doublets |
A SingleCellExperiment object, with the colData columns 'type' indicating whether the cell is a singlet or doublet, and 'cluster' indicating from which cluster (or cluster combination) it was simulated.
sce <- mockDoubletSCE()