encoderModel_train_encoder {scAlign}R Documentation

encoder for scAlign

Description

Aligns paired data into a joint embedding space.

Usage

encoderModel_train_encoder(
  FLAGS,
  CV,
  config,
  num_labels,
  data_shape,
  obj1_name,
  obj2_name,
  source_data,
  source_labels,
  target_data,
  target_labels
)

Arguments

FLAGS

Tensorflow run arguments.

CV

Model that is being run.

config

Hardware configuration options.

num_labels

Number of unique labels.

data_shape

Dimensions of input data.

source_data

Source data matrix (cell x feature).

source_labels

Source data labels.

target_data

Target data matrix (cell x feature).

target_labels

Target data labels.

Value

Final alignment results


[Package scAlign version 1.7.0 Index]