plotDistance2Codon {ribosomeProfilingQC} | R Documentation |
Metaplot of P site distribution in all the CDS aligned by the start codon or stop codon.
plotDistance2Codon( reads, start = TRUE, anchor = 50, col = c(Frame_0 = "#009E73", Frame_1 = "#D55E00", Frame_2 = "#0072B2") )
reads |
Output of assignReadingFrame. |
start |
Plot for start codon or stop codon. |
anchor |
The maximal xlim or (min, max) position for plot. |
col |
Colors for different reading frame. |
Invisible height of the barplot.
pcs <- readRDS(system.file("extdata", "samplePc.rds", package="ribosomeProfilingQC")) plotDistance2Codon(pcs) #plotDistance2Codon(pcs, start=FALSE) #plotDistance2Codon(pcs, anchor=c(-10, 20))