list_attributes {regutools} | R Documentation |
List all attributes and their description of a dataset from
RegulonDB. The result of this function may
be used as parameter 'values' in list_attributes()
function.
list_attributes(regulondb, dataset)
regulondb |
A |
dataset |
Dataset of interest. The name should correspond to a table of the database. |
A character vector with the field names.
Carmina Barberena Jonás, Jesús Emiliano Sotelo Fonseca, José Alquicira Hernández, Joselyn Chavez
## Connect to the RegulonDB database if necessary if (!exists("regulondb_conn")) regulondb_conn <- connect_database() ## Build the regulon db object e_coli_regulondb <- regulondb( database_conn = regulondb_conn, organism = "E.coli", database_version = "1", genome_version = "1" ) ## List the transcription factor attributes list_attributes(e_coli_regulondb, "TF") ## List the operon attributes list_attributes(e_coli_regulondb, "OPERON")