processBiogrid {rTRM}R Documentation

Process a data.frame with BioGRID data into a network for a target organism

Description

Process a data.frame with BioGRID data into a network for a target organism.

Usage

processBiogrid(dblist, org = "human", simplify = TRUE, type = "physical", mimic.old = FALSE)

Arguments

dblist

data.frame containing the BioGRID data.

org

target organism (default: "human")

simplify

whether to eliminate redundant edges (default TRUE)

type

type of interaction (physical or genetic) to include (default: "physical")

mimic.old

mimic old behavior of processBiogrid() when interactions for multiple species could be retrieved. Used only for testing.

Value

An igraph object.

Author(s)

Diego Diez


[Package rTRM version 1.31.2 Index]