accuracy {rRDP} | R Documentation |
Calculate the classification accuracy at a given phylogenetic level.
accuracy(actual, predicted, rank) confusionTable(actual, predicted, rank)
actual |
data.frame with the actual classification hierarchy. |
predicted |
data.frame with the predicted classification hierarchy. |
rank |
rank at which the accuracy should be evaluated. |
The accuracy or a confusion table.
seq <- readRNAStringSet(system.file("examples/RNA_example.fasta", package="rRDP")) ### decode the actual classification actual <- decode_Greengenes(names(seq)) ### use RDP to predict the classification pred <- predict(rdp(), seq) ### calculate accuracy confusionTable(actual, pred, "genus") accuracy(actual, pred, "genus")