plotDomainogramNearViewpoint {r3Cseq} | R Documentation |
Plot domainogram of interaction regions near the viewpoint
plotDomainogramNearViewpoint(object,smoothing.parameter=0.1,distance=5e5,maximum_window=25e3,view=c("experiment","control","both"))
object |
r3Cseq or r3CseqInBatch object |
smoothing.parameter |
A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1) |
distance |
Numeric. The distance relative to the viewpoint (default=5e5) |
maximum_window |
Numeric. The maximum windowing (default=25e3). We normally compute the interaction regions per window starting from 2Kb to maximum window (default=25kb) to make the interaction matrix for visualizing the domainogram. |
view |
character. The selected view of data (default="experiment") |
Plots of domainogram for interaction regions close to the viewpoint
S. Thongjuea
plotOverviewInteractions
, plotInteractionsPerChromosome
,
plotInteractionsNearViewpoint
# See the vignette