getBatchReadCountPerRestrictionFragment {r3Cseq} | R Documentation |
Counts the number of reads from 3C-Seq data per each restriction fragment for replicates analysis
getBatchReadCountPerRestrictionFragment(object,getReadsMethod = c("wholeReads", "adjacentFragmentEndsReads"), nFragmentExcludedReadsNearViewpoint=2)
object |
r3CseqInBatch object |
getReadsMethod |
character. To count all reads found in the particular restriction fragment uses wholeReads option. To count reads found around the edge of restriction fragment both 5'utr and 3'utr uses adjacentFragmentEndsReads option (default=wholeReads) |
nFragmentExcludedReadsNearViewpoint |
Numeric. The number of excluded fragments around the viewpoint, reads found in these fragments will be removed from the analysis (default=2) |
The RangedData represents the number of reads per each restriction fragment
S. Thongjuea
getReadCountPerWindow, getReadCountPerRestrictionFragment
#See the vignette