overrep_reads {qckitfastq} | R Documentation |
Sort all sequences per read by count.
overrep_reads(infile, output_file = NA)
infile |
Path to gzippped FASTQ file. |
output_file |
File to save data frame to. Default NA. |
Table of sequences sorted by count.
infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq") overrep_reads(infile)[1:5,]