qual_score_per_read {qckitfastq}R Documentation

Calculate the mean quality score per read of the FASTQ gzipped file

Description

Calculate the mean quality score per read of the FASTQ gzipped file

Usage

qual_score_per_read(infile)

Arguments

infile

A string giving the path for the fastqfile

Value

mean quality per read

Examples

infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
qual_score_per_read(infile)$q50_per_position[1:10]

[Package qckitfastq version 1.9.0 Index]