getOmicsDataset {pwOmics} | R Documentation |
This function returns the omics datasets of the experiment.
getOmicsDataset(data_omics, writeData = FALSE)
data_omics |
OmicsData object. |
writeData |
boolean value indicating if datasets should be written into csv file. |
list with protein data set as first element and gene data set as second element; both elements contain matrices with significant proteins/ genes/transcripts at the given time points.
## Not run: data(OmicsExampleData) data_omics = readOmics(tp_prots = c(0.25, 1, 4, 8, 13, 18, 24), tp_genes = c(1, 4, 8, 13, 18, 24), OmicsExampleData, PWdatabase = c("biocarta", "kegg", "nci", "reactome"), TFtargetdatabase = c("userspec")) getOmicsDataset(data_omics) ## End(Not run)