prepareJunctionQuantSTAR {psichomics} | R Documentation |
Prepare user-provided files to be loaded into psichomics
prepareJunctionQuantSTAR(..., startOffset = -1, endOffset = +1) prepareGeneQuantSTAR( ..., strandedness = c("unstranded", "stranded", "stranded (reverse)") )
... |
Character: path of (optionally named) input files (see Examples) |
startOffset |
Numeric: value to offset start position |
endOffset |
Numeric: value to offset end position |
strandedness |
Character: strandedness of RNA-seq protocol; may be one
of the following: |
Prepared file (if output != NULL
) and object
## Not run: prepareJunctionQuant("Control rep1"=junctionFile1, "Control rep2"=junctionFile2, "KD rep1"=junctionFile3, "KD rep2"=junctionFile4) ## End(Not run) ## Not run: prepareGeneQuant("Control rep1"=geneCountFile1, "Control rep2"=geneCountFile2, "KD rep1"=geneCountFile3, "KD rep2"=geneCountFile4) ## End(Not run)