diagramSplicingEvent {psichomics} | R Documentation |
Prepare SVG diagram of alternative splicing events
diagramSplicingEvent( parsed, type, class = "pull-right", style = NULL, showText = TRUE, showPath = TRUE, showAlternative1 = TRUE, showAlternative2 = TRUE, constitutiveWidth = NULL, alternativeWidth = NULL, intronWidth = NULL, constitutiveFill = "lightgray", constitutiveStroke = "darkgray", alternative1Fill = "#ffb153", alternative1Stroke = "#faa000", alternative2Fill = "#caa06c", alternative2Stroke = "#9d7039" )
parsed |
Alternative splicing event |
type |
Character: alternative splicing event type |
class |
Character: class of SVG parent tag |
style |
Character: style of SVG parent tag |
showText |
Boolean: display coordinates and length (if available) |
showPath |
Boolean: display alternative splicing junctions |
showAlternative1 |
Boolean: show alternative exon 1 and respective splicing junctions and text? |
showAlternative2 |
Boolean: show alternative exon 2 and respective splicing junctions and text? (only related with mutually exclusive exons) |
constitutiveWidth |
Numeric: width of constitutive exon(s) |
alternativeWidth |
Numeric: width of alternative exon(s) |
intronWidth |
Numeric: width of intron's representation |
constitutiveFill |
Character: fill colour of constitutive exons |
constitutiveStroke |
Character: stroke colour of constitutive exons |
alternative1Fill |
Character: fill colour of alternative exon 1 |
alternative1Stroke |
Character: stroke colour of alternative exon 1 |
alternative2Fill |
Character: fill colour of alternative exon 2 |
alternative2Stroke |
Character: stroke colour of alternative exon 2 |
Diagrams per alternative splicing event in SVG