getSampleFromSubject {psichomics} | R Documentation |
Get samples matching the given subjects
getSampleFromSubject( patients, samples, clinical = NULL, rm.NA = TRUE, match = NULL, showMatch = FALSE )
patients |
Character or list of characters: subject identifiers |
samples |
Character: sample identifiers |
clinical |
Data frame or matrix: clinical dataset |
rm.NA |
Boolean: remove missing values? |
match |
Integer: vector of subject index with the sample identifiers as name to save time (optional) |
showMatch |
Boolean: show matching subject index? |
Names of the matching samples (if showMatch = TRUE
,
a character with the subjects as values and their respective samples as names
is returned)
Other functions for data grouping:
createGroupByAttribute()
,
getGeneList()
,
getSubjectFromSample()
,
groupPerElem()
,
plotGroupIndependence()
,
testGroupIndependence()
subjects <- c("GTEX-ABC", "GTEX-DEF", "GTEX-GHI", "GTEX-JKL", "GTEX-MNO") samples <- paste0(subjects, "-sample") clinical <- data.frame(samples=samples) rownames(clinical) <- subjects getSampleFromSubject(subjects[c(1, 4)], samples, clinical)