add_scaled_counts_bulk.calcNormFactor {ppcseq} | R Documentation |
Calculate the norm factor with calcNormFactor from limma
add_scaled_counts_bulk.calcNormFactor( .data, reference = NULL, .sample = sample, .transcript = transcript, .abundance = count, method )
.data |
A tibble |
reference |
A reference matrix, not sure if used anymore |
.sample |
The name of the sample column |
.transcript |
The name of the transcript/gene column |
.abundance |
The name of the transcript/gene abundance column |
method |
A string character. The scaling method passed to the backend function (i.e., edgeR::calcNormFactors; "TMM","TMMwsp","RLE","upperquartile") |
A list including the filtered data frame and the normalization factors