setGenome {pipeFrame}R Documentation

Configure genome for all steps

Description

Configure the reference genome assembly for all steps.

Usage

getValidGenome()

setGenome(genome)

getGenome()

Arguments

genome

Character scalar. Valid genome to be configured.

Value

getValidGenome

Character scalar. All valid genome assemblies for this package.

setGenome

All packages and dependencies are configured and installed. No value will be returned.

getGenome

Character scalar. Display the configured genome.

Examples

getValidGenome()
setGenome("hg19")
getGenome()


[Package pipeFrame version 1.9.2 Index]