scrna_evalPlot_overall {pipeComp}R Documentation

scrna_evalPlot_overall

Description

Plots a multi-level summary heatmap of many analyses of the 'scrna_pipeline'.

Usage

scrna_evalPlot_overall(
  res,
  agg.by = NULL,
  width = NULL,
  datasets_as_columnNames = TRUE,
  rowAnnoColors = NULL,
  column_names_gp = gpar(fontsize = 10),
  column_title_gp = gpar(fontsize = 12),
  heatmap_legend_param = list(by_row = TRUE, direction = "horizontal", nrow = 1),
  ...
)

Arguments

res

Aggregated pipeline results (i.e. the output of 'runPipeline' or 'aggregateResults')

agg.by

The paramters by which to aggregate.

width

The width of individual heatmap bodies.

datasets_as_columnNames

Logical; whether dataset names should be printed below the columns (except for silhouette) rather than using a legend.

rowAnnoColors

Optional list of colors for the row annotation variables (passed to 'HeatmapAnnotation(col=...)')

column_names_gp

Passed to each calls to 'Heatmap'

column_title_gp

Passed to each calls to 'Heatmap'

heatmap_legend_param

Passed to each calls to 'Heatmap'

...

Passed to each calls to 'Heatmap'

Value

A HeatmapList

Examples

library(ComplexHeatmap)
data("exampleResults")
h <- scrna_evalPlot_overall(exampleResults)
draw(h, heatmap_legend_side="bottom")

[Package pipeComp version 1.3.0 Index]