convert_to_long {philr} | R Documentation |
Converts wide format ILR transformed data (see philr
) to
long format useful in various plotting functions where long format data is
required.
convert_to_long(x, labels)
x |
PhILR transformed data in wide format (samples by balances)
(see |
labels |
vector (of length |
x
in long format with columns
sample
labels
coord
value
tr <- named_rtree(5) x <- t(rmultinom(10,100,c(.1,.6,.2,.3,.2))) + 0.65 # add small pseudocount colnames(x) <- tr$tip.label x.philr <- philr(x, tree=tr, part.weights='enorm.x.gm.counts', ilr.weights='blw.sqrt', return.all=FALSE) convert_to_long(x.philr, rep(c('a','b'), 5))