smokers {pairkat}R Documentation

Smokers - PaIRKAT Example Data

Description

A synthetic data set of human subjects with phenotype variables related to lung health among smokers. Subjects have associated metabolomics assay data that are linked to KEGG pathway database IDs.

Usage

data(smokers)

Format

A SummarizedExperiment S4 object containing the following components

phenotype

A dataframe containing phenotype variables and outcomes of interest. Row names are subject IDs.

pathways

A dataframe containing pathway database identifiers (i.e. KEGG IDs). Row names are metabolite names

metabalome

A dataframe containing a metabolomics assay. Row names are metabolite names and column names are subject IDs.


[Package pairkat version 0.99.5 Index]