run_benchmark {orthogene} | R Documentation |
Runs benchmarks tests on all_genes and convert_orthologs across multiple species, using multiple methods ("homologene", and "gprofiler").
run_benchmark( species_mapped, benchmark_homologene = TRUE, benchmark_gprofiler = TRUE, run_convert_orthologs = TRUE, remove_failed_times = FALSE, save_path = tempfile(fileext = ".csv"), mc.cores = 1, verbose = TRUE )
species_mapped |
Species names. |
benchmark_homologene |
Benchmark method "homologene". |
benchmark_gprofiler |
Benchmark method "gprofiler". |
run_convert_orthologs |
Benchmark convert_orthologs function. |
remove_failed_times |
In instances where
no genes were returned, set time to |
save_path |
Path to save results to. |
mc.cores |
Number of cores to parallelise species across. |
verbose |
Print messages. |
data.table
with benchmark results