gprofiler_orgs {orthogene}R Documentation

Reference organisms

Description

Organism for which gene references are available via gProfiler API.

Used as a backup if API is not available.

Usage

gprofiler_orgs

Format

data.frame URL <- 'https://biit.cs.ut.ee/gprofiler/api/util/organisms_list' gprofiler_orgs <- jsonlite::fromJSON(URL) gprofiler_orgs <- dplyr::arrange(gprofiler_orgs, scientific_name) usethis::use_data(gprofiler_orgs, overwrite = TRUE, internal=TRUE)

Source

gProfiler site


[Package orthogene version 1.0.0 Index]