map_orthologs_gprofiler {orthogene} | R Documentation |
Map orthologs from one species to another using gorth.
map_orthologs_gprofiler( genes, input_species, output_species = "human", filter_na = FALSE, mthreshold = Inf, verbose = TRUE, ... )
genes |
Gene list. |
input_species |
Name of the input species (e.g., "mouse","fly"). Use map_species to return a full list of available species. |
output_species |
Name of the output species (e.g. "human","chicken"). Use map_species to return a full list of available species. |
filter_na |
Logical indicating whether to
filter out results without a corresponding target name.
(DEFAULT is |
mthreshold |
Maximum number of ortholog names per gene to show.
Passed to gorth.
Only used when |
verbose |
Print messages. |
... |
Additional arguments to be passed to gorth. |
"mthreshold
is used to set the maximum number
of ortholog names per gene to show. This is useful to handle
the problem of having many orthologs per gene
(most of them uninformative). The function tries to
find the most informative by selecting the most popular ones."
~ From
gprofiler2
vignette
Available namespaces for the numeric_ns
argument can be found
here.
Ortholog map data.frame