plotAssociation {omicRexposome} | R Documentation |
This function draws two type of plots for the ResultSet from association functions
plotAssociation(object, rid = 1, coef = 2, contrast = 1, type = c("manhattan", "qq", "volcano"), tPV = NULL, tFC = NULL, show.effect = FALSE) ## S4 method for signature 'ResultSet' plotAssociation(object, rid = 1, coef = 2, contrast = NULL, type = c("manhattan", "qq", "volcano"), tPV = NULL, tFC = NULL, show.effect = FALSE)
object |
An object of class ResultSet obtained from assoc_* functions. |
rid |
(default |
coef |
(default |
contrast |
(default |
type |
Can take |
tPV |
(optional) Threshold for P.Value when |
tFC |
(optional) Threshold for Fold Change or Effect when
|
show.effect |
(default |
A ggplot2 object
plotIntegration
for plotting integration results.
association
to create a ResultSet
to be passed to
this function.
data("asr", package = "omicRexposome") plotAssociation(asr, type = "qq") plotAssociation(asr, type = "volcano")