image {oligo} | R Documentation |
Produces a pseudo-image (graphics::image
) for each sample.
## S4 method for signature 'FeatureSet' image(x, which, transfo=log2, ...) ## S4 method for signature 'PLMset' image(x, which=0, type=c("weights","resids", "pos.resids","neg.resids","sign.resids"), use.log=TRUE, add.legend=FALSE, standardize=FALSE, col=NULL, main, ...)
x |
|
which |
integer indices of samples to be plotted (optional). |
transfo |
function to be applied to the data prior to plotting. |
type |
Type of statistics to be used. |
use.log |
Use log. |
add.legend |
Add legend. |
standardize |
Standardize residuals. |
col |
Colors to be used. |
main |
Main title. |
... |
parameters to be passed to |
if(require(oligoData) & require(pd.hg18.60mer.expr)){ data(nimbleExpressionFS) par(mfrow=c(1, 2)) image(nimbleExpressionFS, which=4) ## fit <- fitPLM(nimbleExpressionFS) ## image(fit, which=4) plot(1) ## while fixing fitPLM TODO }