betaStat-methods {npGSEA} | R Documentation |
betaStat
~~This function returns the corresponding beta statistic
which is compared to the reference
beta distribution for the npGSEA
analysis in the gene set in the
given experiment.
betaStat(object)
object |
An object of type
|
signature(object = "npGSEAResultBeta")
Returns the beta-statistic
for a npGSEAResultBeta
object
signature(object = "npGSEAResultBetaCollection")
Returns a list of
the beta-statistics for a npGSEAResultBetaCollection
objects (1 for each set)
Jessica L. Larson
npGSEAResultBeta
-class
set.seed(15) yFactor <- as.factor( c(rep("treated", 5), rep("control", 5)) ) xData <- matrix(data=rnorm(length(letters)*10) ,nrow=length(letters), ncol=10) rownames(xData) <- letters geneSetABC15 <- GeneSet(geneIds=letters[1:15], setName="setABC15") res <- npGSEA(x = xData, y = yFactor, set = geneSetABC15, approx= "beta") betaStat(res)