nonOverlapRNAseq_solo {nanotatoR} | R Documentation |
Annotating the Non-Overlapping genes with RNAseq expression
nonOverlapRNAseq_solo(gnsNonOverlap, SVID, RNASeqData, pattern_Proband = NA)
gnsNonOverlap |
character. Vector containing non-overlapping genes. |
SVID |
character. SV Index ID. |
RNASeqData |
dataFrame. RNAseq data with gene names. |
pattern_Proband |
character. Pattern for proband. |
Dataframe containing TPM read counts of overlapping genes.
RNASeqDir = system.file("extdata", package="nanotatoR") returnMethod="dataFrame" datRNASeq <- RNAseqcombine_solo(RNASeqDir = RNASeqDir, returnMethod = returnMethod) gnsNonOverlap <- c("DDX11L1", "MIR1302-2HG", "OR4G4P") SVID = 397 datgnnonovrlap <- nonOverlapRNAseq_solo(gnsNonOverlap = gnsNonOverlap, SVID = SVID, RNASeqData = datRNASeq, pattern_Proband = "*_P_*")