extract_variants_from_maf_file {musicatk} | R Documentation |
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extract_variants_from_maf_file(maf_file, extra_fields = NULL)
maf_file |
Location of maf file |
extra_fields |
Optionally extract additional columns from the
object. Default |
Returns a data.table of variants from a maf
maf_file <- system.file("extdata", "public_TCGA.LUSC.maf", package = "musicatk") maf <- extract_variants_from_maf_file(maf_file = maf_file)