add_target_matches {multicrispr} | R Documentation |
Add target matches
add_target_matches( spacers, targets, bsgenome, mismatches = 2, pam = "NGG", outdir = OUTDIR, verbose = TRUE )
spacers |
GRanges |
targets |
GRanges |
bsgenome |
BSgenome |
mismatches |
number |
pam |
string |
outdir |
bowtie output directory |
verbose |
TRUE (default) or FALSE |
GRanges
require(magrittr) file <- system.file('extdata/SRF.bed', package='multicrispr') bsgenome <- BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10 targets0 <- bed_to_granges(file, 'mm10') targets <- extend(targets0) spacers <- find_spacers(targets, bsgenome, complement = FALSE, ontargetmethod = NULL, offtargetmethod = NULL) spacers %<>% add_target_matches(targets, bsgenome)