runMultiDeseqAnalysis {multiSight}R Documentation

Enrichment function

Description

Runs DESEQ2 analysis on all omic data blocks.

Usage

runMultiDeseqAnalysis(omicDataList, padjUser)

Arguments

omicDataList

List of omic data blocks with Y class vector.

padjUser

Threshold for p-value adjusted to select features according to padj values in DESeq2 table.

Value

List of DESeq2's Differential Expression tables for all omic datasets (e.g. BaseMean, Log2FoldChange, padj columns).

Examples

data("omic2", package = "multiSight")
#deseqRes <- runMultiDeseqAnalysis(omic2, 0.05)
data("deseqRes", package = "multiSight")
print(deseqRes$DEtable$rnaRead)



[Package multiSight version 1.1.0 Index]