reducedDimS {monocle}R Documentation

Retrieves the coordinates of each cell in the reduced-dimensionality space generated by calls to reduceDimension.

Description

Reducing the dimensionality of the expression data is a core step in the Monocle workflow. After you call reduceDimension(), this function will return the new coordinates of your cells in the reduced space.

Usage

reducedDimS(cds)

Arguments

cds

A CellDataSet object.

Value

A matrix, where rows are cell coordinates and columns correspond to dimensions of the reduced space.

Examples

## Not run: 
S <- reducedDimS(HSMM)

## End(Not run)

[Package monocle version 2.21.1 Index]