data {mitoClone2} | R Documentation |
List of variants that are likely not true somatic mutations and should thus be excluded
M: Mutant allele counts; N: Reference allele counts. P1: Patient 1; P2: Patient 2
exclusionlists M_P1 N_P1 M_P2 N_P2
A list with four entries: #'
three: Regions of the mitochondrial genome that are within 1 nt of a 3-mer homopolymer (e.g. AAA)
mutaseq: Mutations in the mitochondrial genome that were reoccuring across patients (present in more than one individual in the MutaSeq dataset)
masked: Regions of the mitochondrial genome that are soft-masked in the UCSC or Ensembl annotations
rnaEDIT: Regions of the mitochondrial genome that are thought to be subject to RNA-editing according to the REDIportal V2.0
a data frame of variable sites (columns) across single cells (rows)
An object of class data.frame
with 1430 rows and 16 columns.
An object of class data.frame
with 1430 rows and 16 columns.
An object of class data.frame
with 1066 rows and 22 columns.
An object of class data.frame
with 1066 rows and 22 columns.