net_dis_pcoa {mina} | R Documentation |
Visulization of spectra network distance as PCoA.
Visulization of spectra network distance as PCoA.
net_dis_pcoa(x) ## S4 method for signature 'character' net_dis_pcoa(x)
x |
The folder with all egv files generated by net_dis_indi(). |
p The plotted figure.
p The plotted figure.
## Not run: data(maize) norm(maize) <- maize_asv2 maize <- fit_tabs(maize) maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir = "./individual_bs_pm/") maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE, dir = "./egv_folder/") p <- net_dis_pcoa("./egv_folder/") ## End(Not run) ## Not run: data(maize) maize <- norm_tab(maize) maize <- fit_tabs(maize) maize <- get_rep(maize, top = 5) maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir = "./individual_bs_pm/") maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE, dir = "./egv_folder/") p <- net_dis_pcoa("./egv_folder/") ## End(Not run)