net_cls {mina} | R Documentation |
Network clustering of sparsed adjacacency matrix.
net_cls(x, method, ...)
x |
An object of class 'mina' with 'adj' defined. |
method |
The clustering method used. |
... |
Additional parameters. |
The network clustering results.
maize <- new("mina", tab = maize_asv2, des = maize_des2) maize <- norm_tab(maize, method = "raref", depth = 1000) maize <- fit_tabs(maize) maize <- adj(maize, method = "spearman") maize <- net_cls(maize, method = "mcl", cutoff = 0.4, neg = FALSE)