marker_table {microbiomeMarker} | R Documentation |
This is the recommended function for both building and accessing microbiome
marker table (marker_table
).
marker_table(object) ## S4 method for signature 'data.frame' marker_table(object) ## S4 method for signature 'microbiomeMarker' marker_table(object)
object |
an object among the set of classes defined by the
microbiomeMarker package that contain |
a marker_table
object.
data(enterotypes_arumugam) mm <- run_limma_voom( enterotypes_arumugam, "Enterotype", contrast = c("Enterotype 3", "Enterotype 2"), pvalue_cutoff = 0.05, p_adjust = "fdr" ) marker_table(mm)