subset_marker {microbiomeMarker} | R Documentation |
Subset markers based on an expression related to the columns and values
within the marker_table
slot of mm
.
subset_marker(mm, ...)
mm |
a |
... |
the subsetting expression passed to |
a subset object in the same class with mm
.
data(enterotypes_arumugam) mm <- run_limma_voom( enterotypes_arumugam, "Enterotype", contrast = c("Enterotype 3", "Enterotype 2"), pvalue_cutoff = 0.01, p_adjust = "none" ) subset_marker(mm, enrich_group == "Enterotype 3")