filterByPheno {microbiomeExplorer}R Documentation

Function to filter the MRexperiment by certain phenotype values

Description

Function to filter the MRexperiment by certain phenotype values

Usage

filterByPheno(MRobj, rm_phenovalues)

Arguments

MRobj

the MRexperiment to subset

rm_phenovalues

list of named vectors with names corresponding to column names in pData and values representing phenotypes within the column

Value

the filtered MRobj

Author(s)

Janina Reeder

Examples

data("mouseData", package = "metagenomeSeq")
filterByPheno(MRobj = mouseData, 
  rm_phenovalues = list("diet" = c("BK"),"mouseID" = c("PM1","PM10")))


[Package microbiomeExplorer version 1.3.0 Index]