simulate2MRexperiment {microbiomeDASim} | R Documentation |
In order to allow investigators to more easily incorporate simulated data,
this package converts the raw output into an MRexperiment object used in the
metagenomeSeq
package.
simulate2MRexperiment(obj, missing = FALSE)
obj |
output from either |
missing |
logical indicator for objects from |
An MRexperiment object
bug_gen <- gen_norm_microbiome(features=6, diff_abun_features=3, n_control=30, n_treat=20, control_mean=2, sigma=2, num_timepoints=4, t_interval=c(0, 3), rho=0.9, corr_str="compound", func_form="M", beta=c(4, 3), IP=c(2, 3.3, 6), missing_pct=0.2, missing_per_subject=2, miss_val=0, asynch_time=TRUE) bug_gen_MR <- simulate2MRexperiment(bug_gen) class(bug_gen_MR)