summarize_phyloseq {microbiome}R Documentation

Summarize phyloseq object

Description

Prints basic information of data.

Usage

summarize_phyloseq(x)

Arguments

x

Input is a phyloseq-class object.

Details

The summarize_phyloseq function will give information on weather data is compositional or not, reads (min. max, median, average), sparsity, presence of singletons and sample variables.

Value

Prints basic information of phyloseq-class object.

Author(s)

Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com

Examples

data(dietswap)
summarize_phyloseq(dietswap)

[Package microbiome version 1.15.1 Index]