overlap {microbiome} | R Documentation |
Quantify microbiota 'overlap' between samples.
overlap(x, detection = 0)
x |
|
detection |
Detection threshold. |
Overlap matrix
Contact: Leo Lahti microbiome-admin@googlegroups.com
Bashan, A., Gibson, T., Friedman, J. et al. Universality of human microbial dynamics. Nature 534, 259–262 (2016). https://doi.org/10.1038/nature18301
data(atlas1006) o <- overlap(atlas1006, detection = 0.1/100)