remove_samples {microbiome}R Documentation

Exclude Samples

Description

Filter out selected samples from a phyloseq object.

Usage

remove_samples(samples = NULL, x)

Arguments

samples

Names of samples to be removed.

x

phyloseq-class object

Details

This complements the phyloseq function prune_samples by providing a way to exclude given groups from a phyloseq object.

Value

Filtered phyloseq object.

Author(s)

Contact: Leo Lahti microbiome-admin@googlegroups.com

References

To cite the microbiome R package, see citation('microbiome')

See Also

phyloseq::prune_samples, phyloseq::subset_samples

Examples

data(dietswap)
pseq <- remove_samples(c("Sample-182", "Sample-222"), dietswap)

[Package microbiome version 1.15.1 Index]