module_miRdistribute {miRSM} | R Documentation |
miRNA distribution analysis of sharing miRNAs by the identified miRNA sponge modules
module_miRdistribute(share_miRs)
share_miRs |
List object: a list of common miRNAs of each miRNA sponge module generated by share_miRs function. |
Matrix object: miRNA distribution in each miRNA sponge module.
Junpeng Zhang (https://www.researchgate.net/profile/Junpeng_Zhang3)
data(BRCASampleData) modulegenes_WGCNA <- module_WGCNA(ceRExp, mRExp) # Identify miRNA sponge modules using sensitivity RV coefficient (SRVC) miRSM_WGCNA_SRVC <- miRSM(miRExp, ceRExp, mRExp, miRTarget, modulegenes_WGCNA, method = "SRVC", SMC.cutoff = 0.01, RV_method = "RV") miRSM_WGCNA_SRVC_genes <- miRSM_WGCNA_SRVC[[2]] miRSM_WGCNA_share_miRs <- share_miRs(miRExp, ceRExp, mRExp, miRTarget, miRSM_WGCNA_SRVC_genes) miRSM_WGCNA_miRdistribute <- module_miRdistribute(miRSM_WGCNA_share_miRs)