commonClockCpgs {methylclock}R Documentation

Get common CpGs

Description

Show the required CpGs contained on input data for the implemented clocks

Usage

commonClockCpgs(object, clock)

Arguments

object

resulting object from checkClocks functions

clock

string with the implemented clock, possible values are : "Knight", "Bohlin", "Mayne" and "Lee", "Horvath", "Hannum", "Levine", "skinHorvath", "PedBE", "Wu" and "TL"

Value

The common CpGs between input data and defined GA clock

Examples

TestDataset <- get_TestDataset()
cpgs.missing.GA <- checkClocksGA(TestDataset)
cpgs.missing <- checkClocks(TestDataset)
commonClockCpgs(cpgs.missing.GA, "Bohlin")
commonClockCpgs(cpgs.missing, "Hannum")

[Package methylclock version 0.99.27 Index]