loadConvergenceData {methylInheritance} | R Documentation |
Load convergence information from RDS files
Description
Load convergence information from RDS files.
Usage
loadConvergenceData(
analysisResultsDir,
permutationResultsDir,
type = c("sites", "tiles"),
inter = c("i2", "iAll"),
position,
by = 100
)
Arguments
analysisResultsDir |
a character string, the path to the
directory that contains the analysis results. The path can be the same as
for the permutatioNResultsDir parameter.
|
permutationResultsDir |
a character string, the path to the
directory that contains the permutation results. The path can be the same
as for the analysisResultsDir parameter.
|
type |
One of the "sites" or "tiles" strings.
Specifies the type
of differentially methylated elements should be returned. For
retrieving differentially methylated bases type = "sites" ; for
differentially methylated regions type = "tiles" .
Default: "sites" .
|
inter |
One of the "i2" or "iAll" strings. Specifies the
type of intersection should be returned. For
retrieving intersection results between two consecutive generations
inter = "i2" ; for intersection results between three
generations or more inter = "iAll" .
Default: "i2" .
|
position |
a positive integer , the position in the list
where the information will be extracted.
|
by |
a integer , the increment of the number of permutations
where the significant level is tested. Default: 100.
|
Value
a graph showing the evolution of the significant level with the
number of permutations
Author(s)
Astrid Deschenes, Pascal Belleau
Examples
## Get the name of the directory where files are stored
filesDir <- system.file("extdata", "TEST", package="methylInheritance")
## Load convergence information
results <- loadConvergenceData(analysisResultsDir = filesDir,
permutationResultsDir = filesDir, type="sites", inter="i2", position=1,
by=1)
[Package
methylInheritance version 1.17.0
Index]