.methylcc_engine {methylCC}R Documentation

.methylcc_engine

Description

Helper function for estimatecc

Usage

.methylcc_engine(Ys, Zs, current_pi_mle, current_theta, epsilon, max_iter)

Arguments

Ys

observed methylation levels in samples provided by user of dimension R x n

Zs

Cell type specific regions of dimension R x K

current_pi_mle

cell composition MLE estimates of dimension K x n

current_theta

other parameter estimates in EM algorithm

epsilon

Add here.

max_iter

Add here.

Value

A list of MLE estimates that is used in estimatecc().


[Package methylCC version 1.7.1 Index]