subset_methrix {methrix} | R Documentation |
methrix
object based on given conditions.Subsets methrix
object based on given conditions.
subset_methrix( m, regions = NULL, contigs = NULL, samples = NULL, overlap_type = "within" )
m |
|
regions |
genomic regions to subset by. Could be a data.table with 3 columns (chr, start, end) or a |
contigs |
chromosome names to subset by |
samples |
sample names to subset by |
overlap_type |
defines the type of the overlap of the CpG sites with the target region. Default value is 'within'. For detailed description,
see the |
Takes methrix
object and filters CpGs based on coverage statistics
An object of class methrix
data('methrix_data') #Subset to chromosome 1 subset_methrix(methrix_data, contigs = 'chr21')