estimateTransDist {methimpute} | R Documentation |
transDist
parameterObtain an estimate for the transDist
parameter (used in function callMethylation
) by fitting an exponential function to the supplied correlations (from distanceCorrelation
).
estimateTransDist(distcor, skip = 2, plot.parameters = TRUE)
distcor |
The output produced by |
skip |
Skip the first n cytosines for the fitting. This can be necessary to avoid periodicity artifacts due to the context definition. |
plot.parameters |
Whether to plot fitted parameters on to the plot or not. |
A list() with fitted transDist
parameters and the corresponding ggplot
.
## Get some toy data file <- system.file("data","arabidopsis_toydata.RData", package="methimpute") data <- get(load(file)) distcor <- distanceCorrelation(data) fit <- estimateTransDist(distcor) print(fit)