MRexperiment2biom {metagenomeSeq} | R Documentation |
Wrapper to convert MRexperiment objects to biom objects.
MRexperiment2biom( obj, id = NULL, norm = FALSE, log = FALSE, sl = 1000, qiimeVersion = TRUE )
obj |
The MRexperiment object. |
id |
Optional id for the biom matrix. |
norm |
normalize count table |
log |
log2 transform count table |
sl |
scaling factor for normalized counts. |
qiimeVersion |
Format fData according to QIIME specifications (assumes only taxonomy in fData). |
A biom object.
loadMeta
loadPhenoData
newMRexperiment
loadBiom
biom2MRexperiment