volcano {maser}R Documentation

Volcano plot of splicing events.

Description

Volcano plot of splicing events.

Usage

volcano(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), fdr = 0.05,
  deltaPSI = 0.1)

Arguments

events

a maser object.

type

character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")

fdr

numeric, FDR (False Discovery Rate) cutoff.

deltaPSI

numeric, absolute minimum PSI (Percent spliced-in) change

Value

a ggplot object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
volcano(hypoxia_filt, type = "SE")

[Package maser version 1.12.0 Index]