plotGenePSI {maser} | R Documentation |
Boxplots of Percent spliced-in levels for gene events.
plotGenePSI(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"), show_replicates = TRUE)
events |
a maser object. |
type |
character indicating splice type. Possible values
are |
show_replicates |
logical, add data points for individual replicates |
a ggplot object.
path <- system.file("extdata", file.path("MATS_output"), package = "maser") hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h")) hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5) hypoxia_mib2 <- geneEvents(hypoxia_filt, geneS = "MIB2") plotGenePSI(hypoxia_mib2, type = "SE", show_replicates = TRUE)