display {maser}R Documentation

Visualization of splicing events annotation using an interactive data table.

Description

Visualization of splicing events annotation using an interactive data table.

Usage

display(events, type = c("A3SS", "A5SS", "SE", "RI", "MXE"))

Arguments

events

a maser object.

type

character indicating splice type. Possible values are c("A3SS", "A5SS", "SE", "RI", "MXE")

Value

a datatables object.

Examples

path <- system.file("extdata", file.path("MATS_output"), package = "maser")
hypoxia <- maser(path, c("Hypoxia 0h", "Hypoxia 24h"))
hypoxia_filt <- filterByCoverage(hypoxia, avg_reads = 5)
hypoxia_top <- topEvents(hypoxia_filt)
display(hypoxia_top, type = "SE")

[Package maser version 1.11.0 Index]