group_snps {martini}R Documentation

Groups nearby SNPs

Description

Groups SNPs closer than a specifiec threshold of distance.

Usage

group_snps(bed, chr_col, pos_col, threshold)

Arguments

bed

data.frame containing at least two properties (chromosome and position) of a set of SNPs.

chr_col

Name of the column containing the SNP chromosome.

pos_col

Name of the column containing the SNP position.

threshold

Maximum distance to group two SNPs group.

Value

A data.frame in bed format, with the same dimensions as the original, but with the groups.


[Package martini version 1.13.0 Index]