mafbarplot {maftools} | R Documentation |
Takes an MAF object and generates a barplot of mutated genes color coded for variant classification
mafbarplot( maf, n = 20, genes = NULL, color = NULL, fontSize = 0.7, includeCN = FALSE, legendfontSize = 0.7, borderCol = "#34495e", showPct = TRUE )
maf |
an |
n |
Number of genes to include. Default 20. |
genes |
Manually provide names of genes. Default NULL. |
color |
named vector of colors for each Variant_Classification. Default NULL. |
fontSize |
Default 0.7 |
includeCN |
Include copy number events if available? Default FALSE |
legendfontSize |
Default 0.7 |
borderCol |
Default "#34495e". Set to 'NA' for no border color. |
showPct |
Default TRUE. Show percent altered samples. |
laml.maf = system.file("extdata", "tcga_laml.maf.gz", package = "maftools") #MAF file laml = read.maf(maf = laml.maf) mafbarplot(maf = laml)