plotProtein {maftools} | R Documentation |
Display protein domains
plotProtein( gene, refSeqID = NULL, proteinID = NULL, domainAlpha = 0.9, showLegend = FALSE, bgBorderCol = "black", axisTextSize = c(1, 1), roundedRect = TRUE, domainBorderCol = "black", showDomainLabel = TRUE, domainLabelSize = 0.8, titleSize = c(1.2, 1), legendTxtSize = 1, legendNcol = 1 )
gene |
HGNC symbol for which protein structure to be drawn. |
refSeqID |
RefSeq transcript identifier for |
proteinID |
RefSeq protein identifier for |
domainAlpha |
Default 1 |
showLegend |
Default TRUE |
bgBorderCol |
Default "black". Set to NA to remove. |
axisTextSize |
text size x and y tick labels. Default c(1,1). |
roundedRect |
Default TRUE. If 'TRUE' domains are drawn with rounded corners. Requires |
domainBorderCol |
Default "black". Set to NA to remove. |
showDomainLabel |
Default TRUE |
domainLabelSize |
text size for domain labels. Default 0.8 |
titleSize |
font size for title and subtitle. Default c(1.2, 1) |
legendTxtSize |
Text size for legend. Default 0.8 |
legendNcol |
Default 1 |
par(mfrow = c(2, 1)) plotProtein(gene = "KIT") plotProtein(gene = "DNMT3A")