CircosCnv {interacCircos}R Documentation

CNV module

Description

Create a copy number variance module

Usage

CircosCnv(
  modulename,
  compareGroup = 1,
  maxRadius = 200,
  minRadius = 190,
  width = 10,
  color = "#CAE1FF",
  ValueAxisManualScale = FALSE,
  ValueAxisMaxScale = 10,
  ValueAxisMinScale = 0,
  strokeColor = "black",
  strokeWidth = 1,
  opacity = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 50,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename

The name of the new module

compareGroup

The group number of this module in compare module

maxRadius, minRadius

The outer and inner ring range of module

width

Width for CNV module

color

Color for CNV module

ValueAxisManualScale

Whether manually control the scale of value or not

ValueAxisMaxScale, ValueAxisMinScale

The max and min scale value for manually control

strokeColor, strokeWidth

The color and width for stroke

opacity

The opacity for module

animationDisplay

Whether display animationn

animationTime, animationDelay, animationType

The time, delay and display type for animationn

data

A list of CNV with details including start, end, value, link, color and html. Details can be found on document

...

Ignored

Value

The module tracks for cnv modules

Examples

cnvData<-cnvExample
Circos(CircosCnv('Cnv01',maxRadius =175, minRadius =116, data =cnvData,width=2,color = "#4876FF")+
CircosBackground("bg01",minRadius = 116,maxRadius = 175,fillColors = "#F2F2F2",axisShow = TRUE),
CNVMouseOverDisplay = TRUE)


[Package interacCircos version 1.3.0 Index]