CircosArc {interacCircos}R Documentation

ARC module

Description

Create the CNV plot without value, Gene domain, Chromosome band

Usage

CircosArc(
  modulename,
  compareGroup = 1,
  outerRadius = 150,
  innerRadius = 130,
  opacity = 1,
  animationDisplay = FALSE,
  animationTime = 2000,
  animationDelay = 20,
  animationType = "bounce",
  data,
  ...
)

Arguments

modulename

The name of the new module

compareGroup

The group number of this module in compare module

innerRadius, outerRadius

Where the module should begin and end

opacity

The opacity for arc

animationDisplay

Whether display animation

animationTime, animationDelay, animationType

The time, delay and display type for animation

data

A list of arc with details including chr, start, end, color, des, link and html. Details can be found on document

...

Ignored

Value

The module tracks for arc modules

Examples

arcData<-arcExample
Circos(CircosArc('Arc01', outerRadius = 212, innerRadius = 224, data=arcData),
 genome=list("EGFR"=1211),outerRadius = 220,genomeFillColor = c("grey"))


[Package interacCircos version 1.3.0 Index]