CircosCnv {interacCircos} | R Documentation |
Create a copy number variance module
CircosCnv( modulename, compareGroup = 1, maxRadius = 200, minRadius = 190, width = 10, color = "#CAE1FF", ValueAxisManualScale = FALSE, ValueAxisMaxScale = 10, ValueAxisMinScale = 0, strokeColor = "black", strokeWidth = 1, opacity = 1, animationDisplay = FALSE, animationTime = 2000, animationDelay = 50, animationType = "bounce", data, ... )
modulename |
The name of the new module |
compareGroup |
The group number of this module in compare module |
maxRadius, minRadius |
The outer and inner ring range of module |
width |
Width for CNV module |
color |
Color for CNV module |
ValueAxisManualScale |
Whether manually control the scale of value or not |
ValueAxisMaxScale, ValueAxisMinScale |
The max and min scale value for manually control |
strokeColor, strokeWidth |
The color and width for stroke |
opacity |
The opacity for module |
animationDisplay |
Whether display animationn |
animationTime, animationDelay, animationType |
The time, delay and display type for animationn |
data |
A list of CNV with details including start, end, value, link, color and html. Details can be found on document |
... |
Ignored |
The module tracks for cnv modules
cnvData<-cnvExample Circos(CircosCnv('Cnv01',maxRadius =175, minRadius =116, data =cnvData,width=2,color = "#4876FF")+ CircosBackground("bg01",minRadius = 116,maxRadius = 175,fillColors = "#F2F2F2",axisShow = TRUE), CNVMouseOverDisplay = TRUE)