show_cpout_features {imcRtools} | R Documentation |
Searchable datatable object of cell and image features as extracted by CellProfiler.
show_cpout_features( path, display = c("cell_features", "image_features"), cell_features = "var_cell.csv", image_features = "var_Image.csv" )
path |
full path to the CellProfiler output folder |
display |
single character indicating which features to display.
Accepted entries are |
cell_features |
single character indicating the name of the file storing the extracted cell features. |
image_features |
single character indicating the name of the file storing the extracted image features. |
a datatable
object
Nils Eling (nils.eling@dqbm.uzh.ch)
read_cpout
for the CellProfiler reader function
path <- system.file("extdata/mockData/cpout", package = "imcRtools") # Display cell features show_cpout_features(path) # Display image features show_cpout_features(path, display = "image_features")