numReadsInBed {icetea} | R Documentation |
Count the number of reads in a given GRanges
numReadsInBed(regions, bams = NA, countall = FALSE)
regions |
The GRanges object to count reads in. |
bams |
character. path to bam files from where the reads have to be counted |
countall |
logical. whether to keep both reads of paired-end data |
Total counts within given ranges per BAM file.